Rare events, path sampling and the OpenPathSampling package

 

In the last few years, modelling of rare events has made tremendous progress and several computational methods have been put forward to study these events. Despite this effort, new approaches have not yet been included, with adequate efficiency and scalability, in common simulation packages. One objective of the Classical Dynamics Work Package of the project E-CAM is to close this gap. The present text is an easy-to-read article on the use of path sampling methods to study rare events, and the role of the OpenPathSampling package to performing these simulations. Practical applications of rare events sampling and scalabilities opportunities in OpenPathSampling are also discussed.

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Direct MD (on-the-fly) flux/rate in OpenPathSampling

This module, based on OpenPathSampling, calculates the flux out of a state and through an interface, or the rate of the transition between two states, while running a trajectory. For more information check the module documentation here.

 

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Extended Software Development Workshop: Classical Molecular Dynamics

If you are interested in attending this workshop, please visit the CECAM website bellow.

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Extended Software Development Workshop: Trajectory Sampling

This is the 3rd of E-CAM’s extended software development workshops; this one on the theme of trajectory sampling.

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